Software

bootComb
R package for deriving confidence intervals for combinations of independent parameter estimates (link takes you to CRAN; latest development version and source code available on GitHub)
testCompareR
R package for comparing the results of two binary diagnostic tests using paired data
Bayesian mixed latent Markov models
R & JAGS code for Bayesian latent Markov models (link takes you to GitHub)
routeHeat
web app for creating graphs with all your runs/walks on one image, using transparent colours to highlight routes most often run/walked; bash and R scripts on GitHub
openambit2gpx
a python script that converts the xml data files produced by the Openambit software into standard gpx format
visPIG
(now retired) web app for creating publication-grade figures of (epi-)genetic datasets; you can also get the scripts etc. to run it locally from your own machine from GitHub
CASOS
an R implementation of the CASOS (Combining Anomaly Scores from Observed Subspaces) algorithm